M.  De Meyer, Bota, L., Daniel, B., Mussumbi, M., Vandenbosch, M., Canhanga, L., Cambula, E., Mansell, M., Cugala, D., and Virgilio, M., ?A checklist of the dacine fruit flies (Diptera, Tephritidae, Dacinae) of Mozambique?, African Entomology, vol. 31, p. e15585, 2023.

Y.  Zhang, Li, H., Feng, S., Qin, Y., De Meyer, M., Virgilio, M., Singh, S., Jiang, F., Priscilla, K. Anastasia, Susanto, A., Martinez-Sañudo, I., Wu, J., BADJI, K., Fekrat, L., Davaasambuu, U., and Li, Z. H. I. H. O. N. G., ?Mitochondrial phylogenomics reveal the evolutionary, speciation and biogeographical history of fruit flies (Diptera: Tephritidae) UNDER REVIEW?. 2024.

G.  Ferrari, Esselens, L., Hart, M., Janssens, S., Kidner, C., Mascarello, M., Peñalba, J., Pezzini, F., von Rintelen, T., Sonet, G., Vangestel, C., Virgilio, M., and Hollingsworth, P., ?Developing the Protocol Infrastructure for DNA Sequencing Natural History Collections?, Biodiversity Data Journal, vol. 11, p. e102317, 2023.

W.  Hendrycks, Delatte, H., Moquet, L., Bourtzis, K., Mullens, N., De Meyer, M., Backeljau, T., and Virgilio, M., ?Eating eggplants as a cucurbit feeder: Dietary shifts affect the gut microbiome of the melon fly            Zeugodacus cucurbitae            (Diptera, Tephritidae)?, vol. 11, 2022.

T.  Maes, De Corte, Z., Vangestel, C., Virgilio, M., Smitz, N., Djuikwo-Teukeng, F. F., Papadaki, M. Ioanna, and Huyse, T., ?Large-scale and small-scale population genetic structure of the medically important gastropod species Bulinus truncatus (Gastropoda, Heterobranchia)?, vol. 15, 2022.

N.  Mullens, Sonet, G., Virgilio, M., Goergen, G., Janssens, S. B., De Meyer, M., and Jordaens, K., ?Systematics of Afrotropical Eristalinae (Diptera: Syrphidae) using mitochondrial phylogenomics?, Systematic Entomology, vol. 47, no. 2, pp. 315 ? 328, 2022.

M.  De Cock, Virgilio, M., Vandamme, P., Bourtzis, K., De Meyer, M., and Willems, A., ?Comparative Microbiomics of Tephritid Frugivorous Pests (Diptera: Tephritidae) From the Field: A Tale of High Variability Across and Within Species?, Frontiers in Microbiology, vol. 11, 2020.

N.  Mullens, Sonet, G., Decru, E., Virgilio, M., Snoeks, J., and Vreven, E., ?Mitogenomic characterization and systematic placement of the Congo blind barb Caecobarbus geertsii (Cypriniformes: Cyprinidae)?, International Journal of Biological Macromolecules, vol. 161, pp. 292 - 298, 2020.

M.  De Cock, Virgilio, M., Vandamme, P., Augustinos, A., Bourtzis, K., Willems, A., and De Meyer, M., ?Impact of Sample Preservation and Manipulation on Insect Gut Microbiome Profiling. A Test Case With Fruit Flies (Diptera, Tephritidae)?, Frontiers in Microbiology, vol. 10, 2019.

G.  Sonet, De Smet, Y., Tang, M., Virgilio, M., Young, A. D., Skevington, J. H., Mengual, X., Backeljau, T., Liu, S., Zhou, X., De Meyer, M., and Jordaens, K., ?First mitochondrial genomes of five hoverfly species of the genus Eristalinus (Diptera: Syrphidae)?, Genome, vol. 62, no. 10, pp. 677 - 687, 2019.

E. L. R.  De Keyzer, De Corte, Z., Van Steenberge, M., Raeymaekers, J. A. M., Calboli, F. C. F., Kmentová, N., Mulimbwa, T. N. ?Sibula, Virgilio, M., Vangestel, C., Mulungula, P. Masilya, Volckaert, F. A. M., and Vanhove, M. P. M., ?First genomic study on Lake Tanganyika sprat Stolothrissa tanganicae: a lack of population structure calls for integrated management of this important fisheries target species?, BMC Evolutionary Biology, vol. 19, no. 1, p. 6, 2019.

G.  Sonet, Pauly, A., Nagy, Z. T., Virgilio, M., Jordaens, K., Van Houdt, J., Worms, S., De Meyer, M., and Backeljau, T., ?Using next-generation sequencing to improve DNA barcoding: lessons from a small-scale study of wild bee species (Hymenoptera, Halictidae)?, Apidologie, vol. 49, pp. 671 ? 685, 2018.

M. K.  Schutze, Virgilio, M., Norrbom, A., and Clarke, A. R., ?Tephritid Integrative Taxonomy: Where We Are Now, with a Focus on the Resolution of Three Tropical Fruit Fly Species Complexes?, Annual Review of Entomology, vol. 62, no. 1, pp. 147 - 164, 2017.

M.  De Meyer, Mwatawala, M., Copeland, R. S., and Virgilio, M., ?Description of new Ceratitis species (Diptera: Tephritidae) from Africa, or how morphological and DNA data are complementary in discovering unknown species and matching sexes?, European Journal of Taxonomy, no. 233, 2016.

S.  Ekesi, De Meyer, M., Mohamed, S. A., Virgilio, M., and Borgemeister, C., ?Taxonomy, Ecology, and Management of Native and Exotic Fruit Fly Species in Africa?, Annual Review of Entomology, vol. 61, no. 1, 2015.

M.  Mwatawala, Kudra, A., Mkiga, A., Godfrey, E., Jeremiah, S., Virgilio, M., and De Meyer, M., ?Preference of Zeugodacus cucurbitae (Coquillett) for three commercial fruit vegetable hosts in natural and semi natural conditions?, Fruits, vol. 70, no. 6, pp. 333 - 339, 2015.

M.  Virgilio, Delatte, H., Nzogela, Y. Beda, Simiand, C., Quilici, S., De Meyer, M., and Mwatawala, M., ?Population structure and cryptic genetic variation in the mango fruit fly, Ceratitis cosyra (Diptera, Tephritidae)?, ZooKeys, vol. 540, pp. 525 - 538, 2015.

M.  De Meyer, Delatte, H., Mwatawala, M., Quilici, S., Vayssieres, J. - F., and Virgilio, M., ?A review of the current knowledge on Zeugodacus cucurbitae (Coquillett) (Diptera, Tephritidae) in Africa, with a list of species included in Zeugodacus?, ZooKeys, vol. 540, pp. 539 - 557, 2015.

J.  Van Cann, Virgilio, M., Jordaens, K., and De Meyer, M., ?Wing morphometrics as a possible tool for the diagnosis of the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera, Tephritidae)?, ZooKeys, vol. 540, pp. 489 - 506, 2015.

K.  Jordaens, Goergen, G., Virgilio, M., Backeljau, T., Vokaer, A., and De Meyer, M., ?DNA barcoding to improve the taxonomy of the Afrotropical hoverflies (Insecta: Diptera: Syrphidae)?, PLOS ONE, vol. 10, no. 10, p. e0140264, 2015.

M.  Virgilio, Jordaens, K., Verwimp, C., White, I. M., and De Meyer, M., ?Higher phylogeny of frugivorous flies (Diptera, Tephritidae, Dacini): Localised partition conflicts and a novel generic classification?, Molecular Phylogenetics and Evolution, 2015.

M.  Virgilio, White, I., and De Meyer, M., ?A set of multi-entry identification keys to African frugivorous flies (Diptera, Tephritidae)?, ZooKeys, vol. 428, pp. 97 - 108, 2014.

G.  Sonet, Jordaens, K., Nagy, Z. T., Breman, F., De Meyer, M., Backeljau, T., and Virgilio, M., ?Adhoc: an R package to calculate ad hoc distance thresholds for DNA barcoding identification?, ZooKeys, vol. 365, no. Special issue: DNA barcoding: a practical tool for fundamental and applied biodiversity research, pp. 329 - 336, 2013.

M.  Virgilio, DELATTE, H., Backeljau, T., and De Meyer, M., ?Macrogeographic population structuring in the cosmopolitan agricultural pest Bactrocera cucurbitae (Diptera: Tephritidae)?, Molecular Ecology, vol. 19, no. 13, pp. 2713 - 2724, 2010.

H.  Delatte, Virgilio, M., Simiand, C., Quilici, S., and De Meyer, M., ?Isolation and characterisation of sixteen microsatellite markers cross-amplifying in a complex of three African agricultural pests (Ceratitis rosa, C. anonae and C. fasciventris, Diptera: Tephritidae)?, Conservation Genetics Resources, vol. 5, no. 1, pp. 31 - 34, 2013.

N.  Erbout, Virgilio, M., Lens, L., Barr, N., and De Meyer, M., ?Discrepancies between subgeneric classification and molecular phylogeny of Ceratitis (Diptera: Tephritidae), can the evolution of host use provide some clues??, Molecular Phylogenetics and Evolution, vol. 60, no. 2, pp. 259 - 264, 2011.

M.  Virgilio, Backeljau, T., Nevado, B., and De Meyer, M., ?Comparative performances of DNA barcoding across insect orders?, BMC Bioinformatics, vol. 11, no. 1, p. 206, 2010.

M.  Virgilio, Jordaens, K., Breman, F. C., Backeljau, T., and De Meyer, M., ?Identifying Insects with Incomplete DNA Barcode Libraries, African Fruit Flies (Diptera: Tephritidae) as a Test Case?, PLoS ONE, vol. 7, no. 2, p. e31581, 2012.